Our laboratory is interested in understanding how chromatin structure is regulated and how perturbations in this regulation can lead to disease. Six to ten feet of human DNA is housed in a nucleus that has a diameter roughly one million times smaller. To do this, DNA is organized into higher-order chromatin structures through interactions with histones and other structural proteins. These chromatin structures not only compact DNA, but they play active roles in controlling fundamental biological processes, such as transcription, replication and DNA repair. Central to the regulation of chromatin structure are proteins collectively known as chromatin remodelers. We are studying a particular class of chromatin remodelers that use energy from ATP hydrolysis to alter DNA-histone contacts. By examining the biochemical activities of these ATP-dependent chromatin remodelers and determining how these activities are utilized, we will be able to bridge the gap between our understanding of the regulation of chromatin structure and the regulation of biological processes. Consequently, we will gain greater insights into the mechanisms by which chromatin remodelers function, and elucidate the contribution of their activities to normal development and disease, such as cancer.
Description of research projectsFox Chase Programs
- Lake RJ, Geyko A, Hemashettar G, Zhao Y, Fan H-Y. UV-induced association of the CSB remodeling protein with chromatin requires ATP-dependent relief of N-terminal autorepression. Molecular Cell. Forthcoming 2010.
- Lavigne M, Eskeland R, Azebi S, Saint-Andr V, Jang SM, Batsché E, Fan H-Y, Kingston RE, Axel Imhof A, Muchardt C. Interaction of HP1 and Brg1/Brm with the globular domain of histone H3 required for HP1-mediated repression. PLoS Genetics. Forthcoming 2009.
- Newman JC, Bailey AD, Fan HY, Pavelitz T, Weiner, AM. An abundant evolutionarily conserved CSB-PiggyBac fusion protein expressed in Cockayne syndrome. PLoS genetics. 2008 Mar 21;4(3):e1000031. PubMed
- Dennis JH, Fan HY, Reynolds MS, Yuan G, Meldrim J, Richter DJ, Peterson DG, Rando, OJ, Noble, WS, Kingston RE. Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Res. 2007 Jun;17(6):928-39. PubMed
- Fan HY, Trotter K, Archer T, Kingston RE. Swapping function of two chromatin remodeling complexes. Molecular Cell. 2005 Mar 18;17(6):805-15.PubMed
- Fan HY, He X, Kingston RE, Narlikar GJ. Distinct Strategies to Make Nucleosomal DNA Accessible. Molecular Cell. 2003 May;11(5):1311-22. PubMed
- Narlikar Gj. Fan HY, Kingston RE. Cooperation between Complexes that Regulate Chromatin Structure and Transcription. Cell. 2002 Feb 22;108(4):475-87. PubMed
- Yu A, Fan HY, Liao D, Bailey AD, Weiner AM. Activation of p53 or loss of the Cockayne syndrome group B repair protein causes metaphase fragility of human U1, U2 and 5S genes. Molecular Cell. 2000 May;5(5):801-10. (The first two authors contributed equally to this work). PubMed
