Faculty Summaries
Suraj Peri, PhD
Assistant Professor
Suraj.Peri@fccc.edu
Office Phone: 215-214-4281
Office: R433

Recent Publications

  • Chen, P., Nogusa, S., Thapa, R.J., Shaller, C., Simmons, H., Peri, S., Adams, G.P., Balachandran, S.  Anti-CD70 immunocytokines for exploitation of interferon-gama-induced RIP1- dependent necrosis in renal cell carcinoma.  PLoS One 8(4):e61446, 2013.  PMCID:PMC3629199
  • Peri, S., López de Cicco, R., Santucci-Pereira, J., Slifker, M., Ross, E.A., Russo, I.H., Russo, P.A., Arslan, A.A., Belitskaya-Lévy, I., Zeleniuch-Jacquotte, A., Bordas, P., Lenner, P., Ahman, J., Afanasyeva, Y., Johansson, R., Sheriff, F., Hallmans, G., Toniolo, P., Russo. J.  Defining the genomic signature of the parous breast. BMC Med. Genomics. 5(1):46., 2012.  PMCID:PMC3487939
  • Roberts, J.L., Buckley, R.H., Luo, B., Pei, J., Lapidus, A., Peri, S., Wei, Q., Shin, J., Parrott, R.E., Dunbrack, R.L. Jr, Testa, J.R., Zhong, X.P., Wiest, D.L.  CD45-deficient severe combined immunodeficiency caused by uniparental disomy.  Proc. Natl. Acad. Sci. U S A 109(26):10456-10461, 2012.  PMCID:PMC3387083
  • Russo, J., Santucci-Pereira, J., de Cicco, R.L., Sheriff, F., Russo, P.A., Peri, S., Slifker, M., Ross, E., Mello, M.L., Vidal, B.C., Belitskaya-Lévy, I., Arslan, A., Zeleniuch-Jacquotte, A., Bordas, P., Lenner, P., Ahman, J., Afanasyeva, Y., Hallmans, G., Toniolo, P., Russo, I.H.  Pregnancy-induced chromatin remodeling in the breast of postmenopausal women.  Int. J. Cancer 131(5):1059-1070, 2012.  PMCID:PMC3350833
  • Belitskaya-Lévy, I., Zeleniuch-Jacquotte, A., Russo, J., Russo, I.H., Bordás, P., Ahman, J., Afanasyeva, Y., Johansson, R., Lenner, P., Li, X., de Cicco, R.L., Peri, S., Ross, E., Russo, P.A., Santucci-Pereira, J., Sheriff, F.S., Slifker, M., Hallmans, G., Toniolo, P., Arslan, A.A.  Characterization of a genomic signature of pregnancy identified in the breast.  Cancer Prev. Res. (Phila) 4(9):1457-1464, 2011. Supported by the Avon Foundation
  • Belitskaya-Lévy, I., Zeleniuch-Jacquotte, A., Russo, J., Russo, I.H., Bordás, P., Ahman, J., Afanasyeva, Y., Johansson, R., Lenner, P., Li, X., de Cicco, R.L., Peri, S., Ross, E., Russo, P.A., Santucci-Pereira, J., Sheriff, F.S., Slifker, M., Hallmans, G., Toniolo, P., Arslan, A.A.  Characterization of a genomic signature of pregnancy identified in the breast.  Cancer Prev. Res. (Phila) 4(9):1457-1464, 2011.
  • Meireles, S., Esteves, G.H., Hirata, Jr., R., Peri, S., Devarajan, K., Slifker, M., Mosier, S.L., Peng, J., Vadhanam, M.V., Hurst, H.E., Neves, E.J., Reis, L.F., Gairola, C.G., Gupta, R.C., Clapper, M.L.  Early changes in gene expression induced by tobacco smoke: evidence for the importance of estrogen within lung tissue.   Cancer Prev. Res. 3:707-717, 2010.
  • Bellacosa, A., Godwin, A.K., Peri, S., Devarajan, K., Caretti, E.,  Vanderveer, L., Bove, B., Slater, C., Zhou, Y., Daly, M., Howard, S.,  Campbell, K.S., Nicolas, E., Yeung, A.T., Clapper, M.L., Crowell,  J.A., Lynch, H.T., Ross, E., Kopelovich, L., Knudson, A.G.  Altered gene expression in morphologically normal epithelial cells from  heterozygous carriers of BRCA1 or BRCA2 mutations.  Cancer Prev. Res. 3:48–61, 2010.
  • Mason, W.S., Low, H.C., Xu, C., Aldrich, C.E., Scougall, C.A., Grosse, A., Clouston, A., Chavez, D., Litwin, S., Peri, S., Jilbert, A.R., Lanford, R.E.  Detection of clonally expanded hepatocytes in chimpanzees with chronic hepatitis B virus infection.  J. Virol. 83:8396-8408, 2009.
  • Kashyap KM, Marimuthu A, Kishore CJ, Peri S, et al. Genome wide Gene Expression Profiling of Esophageal Squamous Cell Carcinoma for Identification of Candidate Cancer Biomarkers. Cancer Biol. 2008 Accepted. Ther.8.1.
  • Ping P, Vondriska TM, Creighton CJ, Gandhi TKB, Yang Z, Menon R, Kwon MS, Cho SY, Drwal G, Kellmann M, Peri S, Suresh S, Gronborg M, Molina H, Chaerkady R, Rekha B, Muthusamy B, Shet AS, Gerszten RE, Wu H, Raftery M, Wasinger V, Schulz-Knappe P, Hanash SM, Paik YK, Hancock WS, States DJ, Omenn GS, Pandey A. A functional annotation of subproteomes in human plasma. Proteomics . 2005;5:3506-3519.
  • Kalume DE, Peri S, Zhong J, Okulate M, Kumar N, Pandey A. Genome Annotation Using Mass Spectrometry-derived Data. BMC Genomics. 2005;19;6:128.
  • Gandhi TKB, Chandran S, Peri S, Saravana R, Amanchy R, Prasad TSK, Pandey A. A bioinformatics analysis of protein tyrosine phosphatases in humans. DNA Res. 2005;2:79-89.
  • Harsha HC, Suresh S, Amanchy R, Deshpande N, Shanker K, Yatish AJ, Muthusamy B, Vrushabendra BM, Rashmi BP, Chandrika KN, Padma N, Sharma S, Badano JL, Ramya MA, Shivashankar HN, Peri S, Choudhury DR, Kavitha MP, Saravana R, Niranjan V, Gandhi TK, Ghosh N, Chandran S, Menezes M, Joy M, Mohan SS, Katsanis N, Deshpande KS, Raghothama C, Prasad CK, Pandey A. A manually curated functional annotation of the human X chromosome. Nat Genet. 2005;37:331-332.
  • Navarro JD, Talreja N, Peri S, Vrushabendra BM, Rashmi BP, Padma N, Surendranath V, Jonnalagadda CK, Kousthub PS, Deshpande N, Shanker K, Pandey A. BioBuilder as a database development and functional annotation platform for proteins. BMC Bioinformatics. 2004;5:43.
  • Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TKB, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A. Human Protein Reference Database as a discovery resource for proteomics. Nucleic Acids Res. 2004;32:D497-501.
  • Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TKB, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, Ramya MA, Zhixing Zhao, Chandrika KN, Padma N, Harsha HC, Yatish AJ, Kavitha MP, Menezes M, Choudhury DR, Suresh S, Ghosh N, Saravana R, Chandran S, Krishna S, Joy M, Anand SK, Madavan V, Joseph A, Wong GW, Schiemann WP, Constantinescu SN, Huang L, Khosravi-Far R, Steen H, Tewari M, Ghaffari S, Blobe GC, Dang CV, Garcia JGN, Pevsner J, Jensen ON, Roepstorff P, Deshpande KS, Chinnaiyan AM, Hamosh A, Chakravarti A, Pandey A. Development of Human Protein Reference Database as an initial platform for approaching systems biology in humans. Genome Res. 2003;13:2363-2371.
  • Navarro JD, Niranjan V, Peri S, Jonnalagadda CK, Pandey A. From Biological databases to platforms for biomedical discovery. Trends Biotechnol. 2003;21:263-268.
  • Pandey A, Peri S, Thacker C, Pugh CA, Collins JJ, Mann, M. Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome. Bioinformatics. 2003;19:169-172.
  • Jebanathirajah JA, Peri S, Pandey A. Toll and Interleukin-1 receptor (TIR) domain-containing proteins in plants - a genomic perspective. Trends Plant Sci. 2002;7:388-391.
  • Peri S, Steen H, Pandey A. GPMAW - a software tool for analyzing proteins and peptides. Trends Biochem Sci. 2001;26:687-689.
  • Peri S, Pandey A. A reassessment of the translation initiation codon in vertebrates. Trends Genet. 2001;17:685-687.
  • Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A. Common pitfalls in bioinformatics-based analyses: Look before you leap. Trends Genet. 2001;17:541-545.
  • Gnansekaran TV, Peri S, Arockiasamy A, Krishnaswamy S. Profiles from structure based sequence alignments of porins can identify β-stranded membrane proteins. Bioinformatics. 2000;16:839-842.